| 2012 | Mike Marshall | (34-26) | North American League | |
| 2013 | James Frisbee | (6-3) | Pacific Association | |
| 2013 | Ryan Priddy | (48-18) | Pacific Association | |
| 2014 | Dan DiPace | (23-16) | Pacific Association | |
| 2014 | Ryan Priddy | (25-14) | Pacific Association | |
| 2015 | Matt Kavanaugh | (48-30) | Pacific Association | |
| 2016 | Matt Kavanaugh | (41-37) | Pacific Association | |
| 2017 | Matt Kavanaugh | (32-46) | Pacific Association | |
| 2019 | Matt Kavanaugh | (50-30) | Pacific Association | |
| 2019 | Oscar Suarez | (38-26) | Pacific Association |
In 2014 Dan DiPace followed Frisbee's lead stepping down in the middle of the season. Dan Dipace Steps down in the middle of the season Ryan Priddy took over again from July
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San Rafael Pacifics 2021 | Stephen Leonetti | 21 | 18 | Pecos League |
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San Rafael Pacifics 2022 | Kyle Ulanday | 41 | 9 | Pecos League |
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San Rafael Pacifics 2023 | Austin Fitzpatrick | 39 | 8 | Pecos League |
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San Rafael Pacifics 2024 | Austin Fitzpatrick | 31 | 23 | Pecos League |
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San Rafael Pacifics 2025 | Chris Johnson | 38 | 16 | Pecos League |
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San Rafael Pacifics 2026 | Chris Johnson | 0 | 0 | Pecos League |